PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_3C9C1DBA1.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 545aa    MW: 63808.4 Da    PI: 7.5406
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_3C9C1DBA1.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.41.3e-1962147191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YAk+ GF v ++++++  ++ + +  t+ C+++gk++ ++k+   + +++++tr++C ak++ +++ ++k+++t++ l+HnH+
  Traes_4DS_3C9C1DBA1.3  62 SFYKDYAKKEGFGVIRRTTRHG-EDSKLVYFTLACNRQGKAQYSSKN---SFKPNPSTRMQCPAKINFSRH-EEKFRITSITLDHNHP 144
                            5***************999998.6666999*************9999...999****************99.9**************9 PP

                   FAR1  89 lap 91 
                            ++p
  Traes_4DS_3C9C1DBA1.3 145 ISP 147
                            875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1762147IPR004330FAR1 DNA binding domain
PfamPF105516.1E-36267361IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MMEPDLIFGE VVDKNRAFED ADEDAVIFEE IRDSSDDQQV EHIMMLQPKK GMTFDSEDAA  60
VSFYKDYAKK EGFGVIRRTT RHGEDSKLVY FTLACNRQGK AQYSSKNSFK PNPSTRMQCP  120
AKINFSRHEE KFRITSITLD HNHPISPSKA RFLRCHKKLN LHAKRRLELN DQAGIRLNKK  180
IGSLVMEAGG YGNLEFGEKE CRNYLQETRR LKLGAGDAHA VYQYFLRMQS KDPDFFHLMD  240
VDKDGRLRNV FWADARSRAT YESYCDVITF DTTYLTNKYS MPFAPFVGVN HHGESVLLGC  300
GLLSNEDTGT FAWLFKSWLC CMSNKPPNVI ITDQCKAMQN AIEEVFPQAR HRWWIWHIMK  360
KIPEKLSGYD KYENIKYTLS NVVYDSLTKC DFDKAWVEMI NKYDLHENEW LAGLYDEKNR  420
WVPAYVKDTF WAGMSSTQRS ESVNAFFDGY VHARTTLKQF VEQYENALRD KVEKETKADS  480
KSFQEEIPCI THFDFEKQFQ VAYTNAKFQE FQEKLRGKIY CYPSLLNNEG PLLTFRIRED  540
RKIFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756066.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLW5EPV80.0W5EPV8_WHEAT; Uncharacterized protein
STRINGBRADI2G36810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-113FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]